MRI Data

Welcome to the MRI Data wiki collection. This wiki contains pages for MRI data and tools.

Wiki pages for the scanner, peripherals and imaging group servers are in MRI Systems.

Data and Formats

• A Short Introduction to DICOM or Where's My Data?
• Image Data Formats and Conversions
• Glossary

Tools

• dcmdb
• Using DICOMQueryTool
• Using Osirix to retrieve data
• Using Horos to retrive data
• DICOM to NifTI conversion
• Slicer - A visualisation and image analysis package
• FSL
• MicroDicom
• OsriX MD and the 64-bit extension
• Stimulus Software

Analysis

• fMRI Analysis
• Granger Causality
• Independent Component Analysis
• Voxel Based Morphometry
• Distortion Correction and Field Maps
• Power Analysis
• Slice timing correction - multiband acquisition

SPM Tutorial Notes

• The notes from the SPM Tutorial Nia did can be found here

VBM Tutorial Notes

• The Notes from the VBM Tutorial can be found here